CDS

Accession Number TCMCG057C07110
gbkey CDS
Protein Id XP_018446765.1
Location join(27647362..27647523,27652012..27652119,27652512..27652760,27652858..27653106,27653202..27653281,27653349..27653454,27653535..27653648,27653731..27653829,27653936..27654025,27654107..27654213,27654310..27654453,27654602..27654887)
Gene LOC108818315
GeneID 108818315
Organism Raphanus sativus

Protein

Length 597aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018591263.1
Definition PREDICTED: DEAD-box ATP-dependent RNA helicase 18 isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description Contains the following InterPro domains RNA helicase, DEAD-box type, Q motif (InterPro IPR014014), DNA RNA helicase, DEAD DEAH box type, N-terminal (InterPro IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro IPR000629), DEAD-like helicase, N-terminal (InterPro IPR014001), DNA RNA helicase, C-terminal (InterPro IPR001650), Helicase, superfamily 1 2, ATP-binding domain (InterPro IPR014021)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14809        [VIEW IN KEGG]
EC 3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010501        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGTTCATCGTCGAACACAAACAAAGCGTTAACGGAGACCCGTTTCTCCGACCTCGAACCTCCACTCTCCGAAGACATCATCGACGCCCTTGACCGGTCCGGTTTCGAGTTCTGCACTCCGGTTCAGGCCGCGACGATCCCTTTGCTCTGCCGCCACAAGGACGTCGCCGTCGACGCCGCCACCGGTTCCGGAAAAACCCTAGCTTTCGTCTTGCCCCTCGTGGAGATTCTCCGTCGTTCCACCTCATATCCTCCGAAGCCTCACCAGATGAAATTGCAGGTTATGGGGGTGATTATCTCTCCAACGAGAGAGCTATCAACGCAGATATATAACGTGGCACTACCCTTTGTTTCCACTTTGGCAAACGTGAACTCTGTGCTGCTTGTCGGAGGCCGAGAGGTGAAGTCCGACATGAACACTATAGAAGAAGGAGGATGCAATCTCTTGATTGGCACTCCTGGAAGGCTCTCTGACATAATGGAACGAATGGAGATTCTCGATTTCAGAAATCTTGAGATTCTTATCTTAGATGAAGCGGATAGGCTTTTGGAGATGGGGTTCCAGAAGCAGGTGAACAGCATTATATCTCGCTTGCCAAAGCAGCGTAGGACTGGTCTCTTTTCAGCTACGCAGACAGAAGGTGTTGAAGAGCTGGCCAAGGCTGGGCTTAGGAATCCTGTGAGAGTTGAAGTTCGTGCTGAGTCCAAGTCGGAATCATCACAGCACTCGACGAACTCTAAAGTACCTTCTGGTCTGCACCTTGAGTATTTGGTATGCGAAGCAGATAAGAAGTCATCACAACTAGTGGATCTCCTCGTCGAGAATCAAAAGAAAAAGCTTATAGTATACTTTATGACCTGTGCTTCTGTTGATTACTGGGGACTCGTGCTTTCGAAAATCCCTGCCCTGAAGTCCATATCTTTAATCCCCATCCATGGGGATATGAAGCAGAATGCAAGAGAAAAGGCATTAGCTTCGTTTACTGAGGCATCAAGCGCTGTCCTTTTGTGCACTGATGTGGCTGCACGTGGACTTGATATTCCAGGCATTGATTACGTAGTTCAGTATGATCCCCCACAAGACCCAAATATGTTCAACCATAGGGTTGGCAGAACTGCAAGATTGGGAAAAGAAGGAAGGGCCATCGTTTTTCTACTGCCTGAGGAAGAAGACTATGTAGAGTTTATGTGCAGAAGAGGGGTTGCTTGTCAAGAGAAACAATGCTCTGAGGAAGCATCTGATGTCATCCCTATCATACGGTCACAAGCCATGAAGGACAGGGCAGTGTTGGAGAAGGGATTAAAGGCATTTGTTTCCTTTGTCCGTGGTTATAAGGAGCATCTCTGCTCTTACATTTTCAGATGGAAAAGCCTAGAAATCGGAAAGTTAGCAATGGGATATGGACTCTTGTATCTTCCTTCAATGTCTGAAGTCAAACAACACAGACTTTCCAGTGAGGGTTTCACTCCCGTCACAGACATCAAGTTTGAGGACATCAAGTTCAAGGACAAATTTAGGGAGAAGCAAAGGAAGCAGAACATGCAAGCAAGGAAAGAGAAACGGGAACAAGAGAAAAAGGAGAAAGGCAAGAAGAACTCTAAAAAGGCGGCTGCTGCTGCTGCTGCCACAGATTCTAACAAAAGGAAGCTAACAGGAAAACAGAGACAAACCATCCAAACCGCTGAAGATGAAGAAGAGATGGCTCGAGACTATCGGTTACTTAAGAAACTCAAGAAAGGTTCTATCAAAGAAGATGATTTTGCTAAACTTACTGGAGCTGATGACTTTTAA
Protein:  
MGSSSNTNKALTETRFSDLEPPLSEDIIDALDRSGFEFCTPVQAATIPLLCRHKDVAVDAATGSGKTLAFVLPLVEILRRSTSYPPKPHQMKLQVMGVIISPTRELSTQIYNVALPFVSTLANVNSVLLVGGREVKSDMNTIEEGGCNLLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQKQVNSIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAESKSESSQHSTNSKVPSGLHLEYLVCEADKKSSQLVDLLVENQKKKLIVYFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNAREKALASFTEASSAVLLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRVGRTARLGKEGRAIVFLLPEEEDYVEFMCRRGVACQEKQCSEEASDVIPIIRSQAMKDRAVLEKGLKAFVSFVRGYKEHLCSYIFRWKSLEIGKLAMGYGLLYLPSMSEVKQHRLSSEGFTPVTDIKFEDIKFKDKFREKQRKQNMQARKEKREQEKKEKGKKNSKKAAAAAAATDSNKRKLTGKQRQTIQTAEDEEEMARDYRLLKKLKKGSIKEDDFAKLTGADDF